Table 2 Databases for tsRNAs

MINTbase

Contains basic information about tRFs currently found in a variety of human tissues and demonstrates the abundance of tRFs in a variety of cancers

http://cm.jefferson.edu/MINTbase/

OncotRF

Can be used to search the expression level and related information of corresponding tRFs in different cancers, and has the functions of tRFs gene network, functional enrichment analysis and survival analysis

http://bioinformatics.zju.edu.cn/OncotRF

PtRFdb

Contains detailed information about tRFs in different plants, is a database of tRFs in plants, helpful for the study of tRFs in plants

http://www.nipgr.res.in/PtRFdb/

tRex

Database of tRFs studies in arabidopsis thaliana

http://combio.pl/trex

tRFdb

Contains information on 3 tRFs for 8 species, searchable by tRF sequence or tRF ID

http://genome.bioch.virginia.edu/trfdb/

tRFexplorer

Differential expression of tsRNAs in TCGA in NCI-60 can be analyzed, and correlation analysis can be performed with genes or miRNAs in TCGA samples

https://trfexplorer.cloud/

tRFTar

Can be customized to search the interaction relationship between tRFs and target genes, and has enrichment analysis and other functions, which is helpful to explore the function of tRFs

http://www.rnanut.net/tRFTar/

tRFTars

The first database to predict potential tRFs targets in humans

http://trftars.cmuzh.ennin.glab.org:3838/tar/

tsRBase

Contains the basic characteristics of tsRNAs in different species as well as the target and biological function information of tsRNAs, which can be searched according to research needs

http://www.tsrbase.org

tsRFun

Provides tsRNAs identification, target prediction, enrichment analysis and other online tools

http://rna.sysu.edu.cn/tsRFun/orhttp://biomed.nscc-gz.cn/DB/tsRFun/

tRFtarget

RNAhybrid and IntaRNA can be used to predict tRFs targets by predicting the interaction between tRFs and transcripts

http://trftarget.net