Table 1 Summary of characteristics of CD20 splice variant transcripts
Transcripts | Donor site (DS) | Acceptor site (AS) | Reading frame | CDS (length) (bp) | Putative proteine | Junction sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
nta | Cryptic (Cr) or canonical (Ca) | Location | Seq | nta | Cryptic (Cr) or canonical (Ca) | Location | Seq | AA (length) | Size (kDa) | nt | AA | |||
D393-CD20 | 112 | Cr | Ex3 | GT | 612 | Cr | Ex7 | AG | Yes | 393 | 131 | 17–23 (15) | TTCACTG/GAACTTG | RMSSL/ELVIA |
D657-CD20 | 337 | Ca | Int5 | GC | 573 | Ca | Int6 | AG | Yes | 657 | 219 | 25 | GTGTTTG/GGCATTT | SRKCL/GILSV |
D618-CD20 | 337 | Ca | Int5 | GC | 612 | Cr | Ex7 | AG | Yes | 618 | 206 | 23 | GTGTTTG/GAACTTG | SRKCL/ELVIA |
D480-CD20 | 160 | Ca | Int3 | GT | 573 | Ca | Int6 | AG | Yes | 480 | 160 | 18 | TTTGGGG/GGCATTT | SKTLG/GILSV |
D177-CD20 | 142 | Cr | Ex3 | GA | 858 | Cr | Ex8 | AG | Yes | 177 | 59 | 6,5 | CATGAGG/GAATCCT | SFFMR/ESSPI |